Microorganisms leverage the CRISPR-Cas system as a defense mechanism against viral intrusions. In the realm of genetic engineering, this microbial immune system is repurposed for the targeted modification of the genetic makeup.
Under the leadership of Professor Dr. Alexander Probst, microbiologist at the Research Center One Health Ruhr at the Research Alliance Ruhr a research team has now discovered another function of this specialised genomic sequence: archaea – microorganisms that are often very similar to bacteria in appearance – also use them to fight parasites.
The team has recently published their findings in Nature Microbiology.
Dr. Alexander Probst. Credit: UDE/Bettina Engel-Albustin
Biochemists Emmanuelle Charpentier and Jennifer Doudna received the Nobel Prize for the biotechnological application of the CRISPR-Cas systems, or 'genetic scissors', for genetic engineering in 2020. However, many functions of this genetic tool are still unexplored to date. Could microorganisms, for example, use them to fight off other microorganisms that live on them as parasites?
With this research question in mind, Alexander Probst analyzed the genetic material of microbes in the Earth's deep crust. 'More than 70 percent of the Earth's microorganisms are housed in the deep biosphere. If we want to understand diversity on our planet, it is worth taking a look into the deep', he explains.
With his team, the microbiologist has analyzed the water that a geyser in the USA spits to the surface from the depths, as well as samples from the Horonobe underground laboratory in Japan. The research team focused on archaea, which live in the ecosystem as hosts and parasites. The tiny microbes are highly similar to bacteria in cell size but have substantially different physiological properties.
The result of their genomic analysis provided new insights: there were conspicuously few parasites in the vicinity of the hosts, and the hosts showed genetic resistance to the parasites. The researchers discovered the reason for this in the genetic scissors in the genome of the microorganisms. 'In the course of evolution, the archaea have incorporated the parasitic DNA. If a parasite with the same DNA now attacks the organism, the foreign genetic material is probably recognized by the CRISPR system and presumably decomposed', Probst explains. The microbiologist is an expert in the analysis of genetic material from environmental samples and uses the latest methods in his lab, such as Oxford Nanopore technology, which enables rapid and comprehensive sequencing of the material.
In order to rule out the possibility that they have only come across isolated cases, the researchers have extended the analysis to over 7,000 genomes and observed the phenomenon very frequently. In future research, this finding will also facilitate distinguishing between beneficial symbionts and harmful parasites. If there has been a CRISPR recognition, the microorganism is very likely to be a parasite. This will probably also help better understand important metabolic processes, such as the carbon flow in ecosystems, in the future.
Reference: "A predicted CRISPR-mediated symbiosis between uncultivated archaea" by Sarah P. Esser, Janina Rahlff, Weishu Zhao, Michael Predl, Julia Plewka, Katharina Sures, Franziska Wimmer, Janey Lee, Panagiotis S. Adam, Julia McGonigle, Victoria Turzynski, Indra Banas, Katrin Schwank, Mart Krupovic, Till L. V. Bornemann, Perla Abigail Figueroa-Gonzalez, Jessica Jarett, Thomas Rattei, Yuki Amano, Ian K. Blaby, Jan-Fang Cheng, William J. Brazelton, Chase L. Beisel, Tanja Woyke, Ying Zhang and Alexander J. Probst, 27 July 2023, Nature Microbiology.
DOI: 10.1038/s41564-023-01439-2
News
A Virus Designed in the Lab Could Help Defeat Antibiotic Resistance
Scientists can now design bacteria-killing viruses from DNA, opening a faster path to fighting superbugs. Bacteriophages have been used as treatments for bacterial infections for more than a century. Interest in these viruses is rising [...]
Sleep Deprivation Triggers a Strange Brain Cleanup
When you don’t sleep enough, your brain may clean itself at the exact moment you need it to think. Most people recognize the sensation. After a night of inadequate sleep, staying focused becomes harder [...]
Lab-grown corticospinal neurons offer new models for ALS and spinal injuries
Researchers have developed a way to grow a highly specialized subset of brain nerve cells that are involved in motor neuron disease and damaged in spinal injuries. Their study, published today in eLife as the final [...]
Urgent warning over deadly ‘brain swelling’ virus amid fears it could spread globally
Airports across Asia have been put on high alert after India confirmed two cases of the deadly Nipah virus in the state of West Bengal over the past month. Thailand, Nepal and Vietnam are among the [...]
This Vaccine Stops Bird Flu Before It Reaches the Lungs
A new nasal spray vaccine could stop bird flu at the door — blocking infection, reducing spread, and helping head off the next pandemic. Since first appearing in the United States in 2014, H5N1 [...]
These two viruses may become the next public health threats, scientists say
Two emerging pathogens with animal origins—influenza D virus and canine coronavirus—have so far been quietly flying under the radar, but researchers warn conditions are ripe for the viruses to spread more widely among humans. [...]
COVID-19 viral fragments shown to target and kill specific immune cells
COVID-19 viral fragments shown to target and kill specific immune cells in UCLA-led study Clues about extreme cases and omicron’s effects come from a cross-disciplinary international research team New research shows that after the [...]
Smaller Than a Grain of Salt: Engineers Create the World’s Tiniest Wireless Brain Implant
A salt-grain-sized neural implant can record and transmit brain activity wirelessly for extended periods. Researchers at Cornell University, working with collaborators, have created an extremely small neural implant that can sit on a grain of [...]
Scientists Develop a New Way To See Inside the Human Body Using 3D Color Imaging
A newly developed imaging method blends ultrasound and photoacoustics to capture both tissue structure and blood-vessel function in 3D. By blending two powerful imaging methods, researchers from Caltech and USC have developed a new way to [...]
Brain waves could help paralyzed patients move again
People with spinal cord injuries often lose the ability to move their arms or legs. In many cases, the nerves in the limbs remain healthy, and the brain continues to function normally. The loss of [...]
Scientists Discover a New “Cleanup Hub” Inside the Human Brain
A newly identified lymphatic drainage pathway along the middle meningeal artery reveals how the human brain clears waste. How does the brain clear away waste? This task is handled by the brain’s lymphatic drainage [...]
New Drug Slashes Dangerous Blood Fats by Nearly 40% in First Human Trial
Scientists have found a way to fine-tune a central fat-control pathway in the liver, reducing harmful blood triglycerides while preserving beneficial cholesterol functions. When we eat, the body turns surplus calories into molecules called [...]
A Simple Brain Scan May Help Restore Movement After Paralysis
A brain cap and smart algorithms may one day help paralyzed patients turn thought into movement—no surgery required. People with spinal cord injuries often experience partial or complete loss of movement in their arms [...]
Plant Discovery Could Transform How Medicines Are Made
Scientists have uncovered an unexpected way plants make powerful chemicals, revealing hidden biological connections that could transform how medicines are discovered and produced. Plants produce protective chemicals called alkaloids as part of their natural [...]
Scientists Develop IV Therapy That Repairs the Brain After Stroke
New nanomaterial passes the blood-brain barrier to reduce damaging inflammation after the most common form of stroke. When someone experiences a stroke, doctors must quickly restore blood flow to the brain to prevent death. [...]
Analyzing Darwin’s specimens without opening 200-year-old jars
Scientists have successfully analyzed Charles Darwin's original specimens from his HMS Beagle voyage (1831 to 1836) to the Galapagos Islands. Remarkably, the specimens have been analyzed without opening their 200-year-old preservation jars. Examining 46 [...]
