How Lockdowns Shaped the Virus: AI Uncovers COVID-19’s Evolutionary Secrets

A new research study shows that human behavior, like lockdowns, influences the evolution of COVID-19, leading to strains that are more transmissible earlier in their lifecycle.

Using artificial intelligence technology and mathematical modeling, a research group led by Nagoya University has revealed that human behavior, such as lockdowns and isolation measures, affect the evolution of new strains of COVID-19. SARS-CoV-2, the virus that causes COVID-19, developed to become more transmissible earlier in its lifecycle. The researcher's findings, published today (November 21) in the scientific journal Nature Communications, provide new insights into the relationship between how people behave and disease-causing agents.

Virus Evolution and Human Impact

As with any other living organism, viruses evolve over time. Those with survival advantages become dominant in the gene pool. Many environmental factors influence this evolution, including human behavior. By isolating sick people and using lockdowns to control outbreaks, humans may alter virus evolution in complicated ways. Predicting how these changes occur is vital to develop adaptive treatments and interventions.

An important concept in this interaction is viral load, which refers to the amount or concentration of a virus present per ml of a bodily fluid. In SARS-CoV-2, a higher viral load in respiratory secretions increases the risk of transmission through droplets.

Viral load relates to the potential to transmit a virus to others. For example, a virus like Ebola has an exceptionally high viral load, whereas the common cold has a low one. However, viruses must perform a careful balancing act, as increasing the maximum viral load can be advantageous, but an excessive viral load may cause individuals to become too sick to transmit the virus to others.

AI-Assisted Research Findings

The research group led by Professor Shingo Iwami at the Nagoya University Graduate School of Science identified trends using mathematical modeling with an artificial intelligence component to investigate previously published clinical data.

They found that the SARS-CoV-2 variants that were most successful at spreading had an earlier and higher peak in viral load. However, as the virus evolved from the pre-Alpha to the Delta variants, it had a shorter duration of infection.

The researchers also found that the decreased incubation period and the increased proportion of asymptomatic infections recorded as the virus mutated also affected virus evolution.

Evolution From Wuhan to Delta Strain

The results showed a clear difference. As the virus evolved from the Wuhan strain to the Delta strain, they found a 5-fold increase in the maximum viral load and a 1.5-fold increase in the number of days before the viral load peaked.

Human Behavior and Virus Evolution

Iwami and his colleagues suggest that human behavioral changes in response to the virus, designed to limit transmission, were increasing the selection pressure on the virus. This caused SARS-CoV-2 to be transmitted mainly during the asymptomatic and presymptomatic periods, which occur earlier in its infectious cycle. As a result, the viral load peak advanced to this period to spread more effectively in the earlier pre-symptomatic stages.

Public Health Strategies and Virus Evolution

When evaluating public health strategies in response to COVID-19 and any future potentially pandemic-causing pathogens, it is necessary to consider the impact of changes in human behavior on virus evolution patterns. "We expect that immune pressure from vaccinations and/or previous infections drives the evolution of SARS-CoV-2," Iwami said. "However, our study found that human behavior can also contribute to the virus's evolution in a more complicated manner, suggesting the need to reevaluate virus evolution."

Their study suggests the possibility that new strains of coronavirus evolved because of a complex interaction between clinical symptoms and human behavior. The group hopes that their research will speed up the establishment of testing regimes for adaptive treatment, effective screening, and isolation strategies.

Reference: "Isolation may select for earlier and higher peak viral load but shorter duration in SARS-CoV-2 evolution" by Junya Sunagawa, Hyeongki Park, Kwang Su Kim, Ryo Komorizono, Sooyoun Choi, Lucia Ramirez Torres, Joohyeon Woo, Yong Dam Jeong, William S. Hart, Robin N. Thompson, Kazuyuki Aihara, Shingo Iwami and Ryo Yamaguchi, 21 November 2023, Nature Communications.
DOI: 10.1038/s41467-023-43043-2